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1.
J Clin Ethics ; 34(2): 211-217, 2023.
Article in English | MEDLINE | ID: covidwho-20242004

ABSTRACT

AbstractPediatric dentists rely on access to hospital operating rooms for safe, effective, and humane delivery of dental care. The children who benefit most from dental treatment in a hospital operating room are those who are very young, have dental anxieties or phobias, are precommunicative or noncommunicative, need extensive or invasive dental treatments, or have special healthcare needs. Diminishing access to hospital operating rooms for pediatric dental treatment has become an escalating problem in contemporary times. Financial barriers, hospital costs, reimbursement rates, health insurance policies and deductibles, out-of-network hospitals, socioeconomic factors, and the COVID-19 pandemic are prominent contributing factors. This problem in access to care has resulted in long waiting times for hospital operating rooms, deferral of medically necessary dental care, and pain and infection among this vulnerable patient population. Pediatric dentists have responded to the problem by utilizing alternative methods of care delivery, such as in-office deep sedation or in-office general anesthesia, and by implementing aggressive medical management of dental caries. However, the youngest of pediatric patients and children with special healthcare needs still remain at a disadvantage in receiving definitive dental treatment. This article aims to highlight the ethical challenges faced by pediatric dentists in contemporary practice in the face of limitations in hospital operating room access through four case scenarios.


Subject(s)
COVID-19 , Dental Caries , Child , Humans , Pediatric Dentistry , Operating Rooms , Pandemics , Hospitals
3.
Process Saf Environ Prot ; 168: 570-581, 2022 Dec.
Article in English | MEDLINE | ID: covidwho-2061776

ABSTRACT

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) causes a respiratory illness called the novel coronavirus 2019 (COVID-19). COVID-19 was declared a pandemic on March 11, 2020. Bow tie analysis (BTA) was applied to analyze the hazard of SARS-CoV-2 for three receptor groups: patient or family member at the IWK Health Centre in acute care, staff member at a British Columbia Forest Safety Council (BCFSC) wood pellet facility, and staff member at the Suncor refinery in Sarnia, Ontario. An inherently safer design (ISD) protocol for BTA was used as a guide for evaluating COVID-19 barriers, and additional COVID-19 controls were recommended. Two communication tools were developed from the IWK bow tie diagram to disseminate the research findings. This research provides lessons learned about the barriers implemented to protect people from contracting COVID-19, and about the use of bow tie diagrams as communication tools. This research has also developed additional example-based guidance that can be used for the COVID-19 pandemic or future respiratory illness pandemics. Recommended future work is the application of BTA to additional industries, the consideration of ISD principles in other control types in the hierarchy of controls (HOC), and further consideration of human and organizational factors (HOF) in BTA.

4.
Webology ; 18(6):780-789, 2021.
Article in English | ProQuest Central | ID: covidwho-1733438

ABSTRACT

The novel coronavirus disease (COVID-19) is evolving as a global public health concern. It has infected millions of people while millions have been died of COVID-19 related illnesses. In Pakistan, COVID-19 had infected all types of people, however;people with pre-existing risky health conditions are at particular risk of contracting the virus. This paper is based upon the argument that different measures such as physical distancing, self-quarantine or isolation, economic lockdown, suspension of non emergency treatment, and travel restrictions that have been adopted to control the spread of COVID-19 have produced treatment interruptions for HIV/AIDS patients. The economic issues faced by the HIV/AIDS patients have intensified other social and psychological challenges and increased their fear of survival. The study was carried out in District Dir Lower, while applying qualitative approach. Fifteen (15) respondents were selected for interview, from a list of 45 respondents (identified through survey). The study utilized purposive sampling techniques, while those HIV/AIDS patients were selected who have faced treatment interruptions as a result financial issues that were created by of COVID-19 pandemic. Verbal consent was obtained and codes instead of names were used to prevent disclosure of respondents' identity. The study found that complete or partial lockdown intensified the existing economic issues of HIV/AIDS patients and as a result they faced treatment interruptions. It was also found that HIV/AIDS patients also faced social and psychological issues, and the fear of exposure to COVID-19 which aggravated their existing vulnerabilities. The study suggests provision of economic packages, strengthening of response towards both HIV/AIDS and COVID-19 patients and extending social and moral support to HIV/AIDS patients to integrate them and decrease their anxiety, frustration and isolation.

5.
BMC Res Notes ; 14(1): 461, 2021 Dec 20.
Article in English | MEDLINE | ID: covidwho-1629128

ABSTRACT

OBJECTIVE: Coronaviruses (CoVs) are natural commensals of bats. Two subgenera, namely Sarbecoviruses and Merbecoviruses have a high zoonotic potential and have been associated with three separate spillover events in the past 2 decades, making surveillance of bat-CoVs crucial for the prevention of the next epidemic. The study was aimed to elucidate the presence of coronavirus in fresh bat guano sampled from Wind Cave Nature Reserve (WCNR) in Sarawak, Malaysian Borneo. Samples collected were placed into viral transport medium, transported on ice within the collection day, and preserved at - 80 °C. Nucleic acid was extracted using the column method and screened using consensus PCR primers targeting the RNA-dependent RNA polymerase (RdRp) gene. Amplicons were sequenced bidirectionally using the Sanger method. Phylogenetic tree with maximum-likelihood bootstrap and Bayesian posterior probability were constructed. RESULTS: CoV-RNA was detected in ten specimens (47.6%, n = 21). Six alphacoronavirus and four betacoronaviruses were identified. The bat-CoVs can be phylogenetically grouped into four novel clades which are closely related to Decacovirus-1 and Decacovirus-2, Sarbecovirus, and an unclassified CoV. CoVs lineages unique to the Island of Borneo were discovered in Sarawak, Malaysia, with one of them closely related to Sarbecovirus. All of them are distant from currently known human coronaviruses.


Subject(s)
Chiroptera , Coronavirus , Animals , Bayes Theorem , Borneo , Coronavirus/genetics , Humans , Malaysia/epidemiology , Phylogeny
6.
Front Psychiatry ; 12: 792058, 2021.
Article in English | MEDLINE | ID: covidwho-1581143

ABSTRACT

Background: Many studies have shown a high prevalence of depression, anxiety, and stress symptoms in COVID-19 patients and the general population. However, very few studies directly examined the potential impact on the health-related quality of life (HRQoL), and none compared HRQoL in COVID-19 patients to the general population amid the pandemic. Methods: We carried out a cross-sectional study comparing HRQoL (as measured using the RAND Short Form 36 or SF-36 Health Survey) in randomly selected individuals from three different groups: hospitalized COVID-19 patients, quarantined COVID-19 patients, and controls from the general population in Qatar. We constructed a multivariate analysis of covariance (MANCOVA) to compare the SF-36 scores between the three groups and control for various covariates. Results: Our sample consisted of 141 COVID-19 inpatients, 99 COVID-19 quarantined patients, and 285 healthy controls. Surprisingly, we found that HRQoL was higher in COVID-19 hospitalized than in COVID-19 non-hospitalized patients than in controls. The main components where COVID-patients scored higher than controls were physical functioning and role limitations due to emotional problems. In COVID-19 patients, the female gender, older age, and past psychiatric history were associated with lower HRQoL. Conclusions: It seems that COVID-19 patient's HRQoL might be better than expected. Our results can be explained by social support from family and friends, easy access to mental health screening and care, and a possible change of perspectives after recovery from COVID-19, resulting in psychological growth and enhanced resilience.

7.
HLA ; 99(1): 25-30, 2022 01.
Article in English | MEDLINE | ID: covidwho-1522855

ABSTRACT

The ability of COVID-19 vaccination to induce anti-HLA antibodies (Abs) formation in renal transplant candidates is not well studied. A 42-year-old man on a renal transplant waitlist, with no sensitization history, was tested for DSA before and after COVID-19 vaccination. Patient has consistently tested negative for COVID-19 virus. Eighteen days after receiving first dose of mRNA-based vaccine, flow cytometry crossmatch (FCXM) was strongly positive with de novo donor-specific Ab (dnDSA) against B57 and de novo non-DSA against B58. Before vaccination, preliminary FCXM was negative with no anti-HLA Abs. This event prompted the transplant team to cancel the surgery. COVID-19 vaccination could be associated with anti-HLA Abs formation in renal patients on waitlists that could affect future transplantability.


Subject(s)
COVID-19 Vaccines/immunology , COVID-19 , Isoantibodies/blood , Kidney Transplantation , Adult , Alleles , COVID-19/prevention & control , Graft Rejection/prevention & control , HLA Antigens/genetics , Humans , Male , Vaccination , Waiting Lists
8.
J Clin Virol ; 145: 105025, 2021 12.
Article in English | MEDLINE | ID: covidwho-1514205

ABSTRACT

An unbiased metagenomics approach to virus identification can be essential in the initial phase of a pandemic. Better molecular surveillance strategies are needed for the detection of SARS-CoV-2 variants of concern and potential co-pathogens triggering respiratory symptoms. Here, a metagenomics workflow was developed to identify the metagenome diversity by SARS-CoV-2 diagnosis (npositive = 65; nnegative = 60), symptomatology status (nsymptomatic = 71; nasymptomatic = 54) and anatomical swabbing site (nnasopharyngeal = 96; nthroat = 29) in 125 individuals. Furthermore, the workflow was able to identify putative respiratory co-pathogens, and the SARS-CoV-2 lineage across 29 samples. The diversity analysis showed a significant shift in the DNA-metagenome by symptomatology status and anatomical swabbing site. Additionally, metagenomic diversity differed between SARS-CoV-2 infected and uninfected asymptomatic individuals. While 31 co-pathogens were identified in SARS-CoV-2 infected patients, no significant increase in pathogen or associated reads were noted when compared to SARS-CoV-2 negative patients. The Alpha SARS-CoV-2 VOC and 2 variants of interest (Zeta) were successfully identified for the first time using a clinical metagenomics approach. The metagenomics pipeline showed a sensitivity of 86% and a specificity of 72% for the detection of SARS-CoV-2. Clinical metagenomics can be employed to identify SARS-CoV-2 variants and respiratory co-pathogens potentially contributing to COVID-19 symptoms. The overall diversity analysis suggests a complex set of microorganisms with different genomic abundance profiles in SARS-CoV-2 infected patients compared to healthy controls. More studies are needed to correlate severity of COVID-19 disease in relation to potential disbyosis in the upper respiratory tract. A metagenomics approach is particularly useful when novel pandemic pathogens emerge.


Subject(s)
COVID-19 , SARS-CoV-2 , COVID-19 Testing , Humans , Metagenomics , Workflow
10.
Clin Pract ; 11(3): 598-606, 2021 Sep 07.
Article in English | MEDLINE | ID: covidwho-1436055

ABSTRACT

Headache, a common prodromal symptom of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection, can also be a manifestation of cerebral venous thrombosis (CVT), secondary to COVID-19. CVT management continues to evolve, with direct oral anticoagulants (DOACs) emerging as an alternative to warfarin. A 44-year-old Asian female, with no past medical history, presented to the emergency room (ER) with complaints of nonproductive cough and left-sided headache. She denied a history of COVID-19 vaccination, and SARS-CoV-2 testing (with reverse transcriptase-polymerase chain reaction) was positive. Non-contrast computed tomography (CT) of the head revealed left transverse sinus hyperdensity, consistent with dense vein sign, and magnetic resonance venography (MRV) confirmed the presence of thrombus. The initial treatment included subcutaneous enoxaparin with headache resolution, and she was discharged on apixaban. Five weeks later, a non-contrast head CT showed resolution of the dense vein sign and recanalisation of left transverse sinus was seen on MRV. This report has highlighted the need for increased awareness of coagulopathy and thrombotic events, including cerebral venous thrombosis, in patients infected with SARS-CoV-2. Unremitting headache, in context of SARS-CoV-2 infection, should be evaluated with appropriate neurovascular imaging. Controlled studies are required to compare the safety and efficacy of DOACs with warfarin for management of cerebral venous thrombosis.

11.
Process Saf Environ Prot ; 152: 701-718, 2021 Aug.
Article in English | MEDLINE | ID: covidwho-1294140

ABSTRACT

This work involves the application of process safety concepts to other fields, specifically bow tie analysis and inherently safer design (ISD) to COVID-19. An analysis framework was designed for stakeholders to develop COVID-19 risk management plans for specific scenarios and receptor groups. This tool is based on the incorporation of the hierarchy of controls (HOC) within bow tie analysis to identify priority barriers. The analysis framework incorporates inherently safer design (ISD) principles allowing stakeholders to assess the adequacy of controls along with the consideration of degradation factors and controls. A checklist has also been developed to help stakeholders identify opportunities to apply the ISD principles of minimization, substitution, moderation, and simplification. This work also considers barrier effectiveness with respect to human and organization factors (HOF) in degradation factors and controls. This paper includes a collection of bow tie elements to develop bow tie diagrams for specific receptor groups and scenarios in Nova Scotia, Canada. The pandemic stage (At-Peak or Post-Peak) and its influence on different scenarios or settings is also considered in this work. Bow tie diagrams were developed for numerous receptor groups; bow tie diagrams modelling a generally healthy individual, a paramedic and a hair salon patron contracting COVID-19 are presented in this work.

12.
Biomed Res Int ; 2021: 5553173, 2021.
Article in English | MEDLINE | ID: covidwho-1288476

ABSTRACT

Real-time genome monitoring of the SARS-CoV-2 pandemic outbreak is of utmost importance for designing diagnostic tools, guiding antiviral treatment and vaccination strategies. In this study, we present an accurate method for temporal and geographical comparison of mutational events based on GISAID database genome sequencing. Among 42523 SARS-CoV-2 genomes analyzed, we found 23202 variants compared to the reference genome. The Ti/Tv (transition/transversion) ratio was used to filter out possible false-positive errors. Transition mutations generally occurred more frequently than transversions. Our clustering analysis revealed remarkable hotspot mutation patterns for SARS-CoV-2. Mutations were clustered based on how their frequencies changed over time according to each geographical location. We observed some clusters showing a clear variation in mutation frequency and continuously evolving in the world. However, many mutations appeared in specific periods without a clear pattern over time. Various important nonsynonymous mutations were observed, mainly in Oceania and Asia. More than half of these mutations were observed only once. Four hotspot mutations were found in all geographical locations at least once: T265I (NSP2), P314L (NSP12), D614G (S), and Q57H (ORF3a). The current analysis of SARS-CoV-2 genomes provides valuable information on the geographical and temporal mutational evolution of SARS-CoV-2.


Subject(s)
COVID-19 , Databases, Nucleic Acid , Evolution, Molecular , Genome, Viral , Mutation , Pandemics , Phylogeny , SARS-CoV-2/genetics , COVID-19/epidemiology , COVID-19/genetics , Humans
13.
BMJ Open ; 11(6): e050667, 2021 06 24.
Article in English | MEDLINE | ID: covidwho-1282102

ABSTRACT

OBJECTIVES: This report estimates the risk of COVID-19 importation and secondary transmission associated with a modified quarantine programme in Canada. DESIGN AND PARTICIPANTS: Prospective analysis of international asymptomatic travellers entering Alberta, Canada. INTERVENTIONS: All participants were required to receive a PCR COVID-19 test on arrival. If negative, participants could leave quarantine but were required to have a second test 6 or 7 days after arrival. If the arrival test was positive, participants were required to remain in quarantine for 14 days. MAIN OUTCOME MEASURES: Proportion and rate of participants testing positive for COVID-19; number of cases of secondary transmission. RESULTS: The analysis included 9535 international travellers entering Alberta by air (N=8398) or land (N=1137) that voluntarily enrolled in the Alberta Border Testing Pilot Programme (a subset of all travellers); most (83.1%) were Canadian citizens. Among the 9310 participants who received at least one test, 200 (21.5 per 1000, 95% CI 18.6 to 24.6) tested positive. Sixty-nine per cent (138/200) of positive tests were detected on arrival (14.8 per 1000 travellers, 95% CI 12.5 to 17.5). 62 cases (6.7 per 1000 travellers, 95% CI 5.1 to 8.5; 31.0% of positive cases) were identified among participants that had been released from quarantine following a negative test result on arrival. Of 192 participants who developed symptoms, 51 (26.6%) tested positive after arrival. Among participants with positive tests, four (2.0%) were hospitalised for COVID-19; none required critical care or died. Contact tracing among participants who tested positive identified 200 contacts; of 88 contacts tested, 22 were cases of secondary transmission (14 from those testing positive on arrival and 8 from those testing positive thereafter). SARS-CoV-2 B.1.1.7 lineage was not detected in any of the 200 positive cases. CONCLUSIONS: 21.5 per 1000 international travellers tested positive for COVID-19. Most (69%) tested positive on arrival and 31% tested positive during follow-up. These findings suggest the need for ongoing vigilance in travellers testing negative on arrival and highlight the value of follow-up testing and contact tracing to monitor and limit secondary transmission where possible.


Subject(s)
COVID-19 , Travel , Alberta/epidemiology , COVID-19/diagnosis , COVID-19 Testing , Humans , Internationality , Prospective Studies , SARS-CoV-2
14.
Process Saf Environ Prot ; 150: 416-432, 2021 Jun.
Article in English | MEDLINE | ID: covidwho-1185215

ABSTRACT

The containment of infectious diseases is challenging due to complex transmutation in the biological system, intricate global interactions, intense mobility, and multiple transmission modes. An emergent disease has the potential to turn into a pandemic impacting millions of people with loss of life, mental health, and severe economic impairment. Multifarious approaches to risk management have been explored for combating an epidemic spread. This work presents the implementation of engineering safety principles to pandemic risk management. We have assessed the pandemic risk using Paté-Cornell's six levels of uncertainty. The susceptible, exposed, infected, quarantined, recovered, deceased (SEIQRD), an advanced mechanistic model, along with the Monte Carlo simulation, has been used to estimate the fatality risk. The risk minimization strategies have been categorized into hierarchical safety measures. We have developed an event tree model of pandemic risk management for distinct risk-reducing strategies realized due to natural evolution, government interventions, societal responses, and individual practices. The roles of distinct interventions have also been investigated for an infected individual's survivability with the existing healthcare facilities. We have studied the Corona Virus Disease of 2019 (COVID-19) for pandemic risk management using the proposed framework. The results highlight effectiveness of the proposed strategies in containing a pandemic.

15.
Open Forum Infect Dis ; 8(1): ofaa607, 2021 Jan.
Article in English | MEDLINE | ID: covidwho-1052209

ABSTRACT

We investigate the utility of the ID Now when compared to RT-PCR to triage patients suspected of having COVID-19 presenting to emergency rooms (ERs) and to screen asymptomatic patients presenting for pre-procedural testing. We find it useful when prevalence of COVID-19 is high in symptomatic patents and potentially useful in asymptomatic patients who are likely to be retested if symptoms emerge.

16.
mBio ; 12(1)2021 01 12.
Article in English | MEDLINE | ID: covidwho-1030241

ABSTRACT

Despite being nearly 10 months into the COVID-19 (coronavirus disease 2019) pandemic, the definitive animal host for SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), the causal agent of COVID-19, remains unknown. Unfortunately, similar problems exist for other betacoronaviruses, and no vouchered specimens exist to corroborate host species identification for most of these pathogens. This most basic information is critical to the full understanding and mitigation of emerging zoonotic diseases. To overcome this hurdle, we recommend that host-pathogen researchers adopt vouchering practices and collaborate with natural history collections to permanently archive microbiological samples and host specimens. Vouchered specimens and associated samples provide both repeatability and extension to host-pathogen studies, and using them mobilizes a large workforce (i.e., biodiversity scientists) to assist in pandemic preparedness. We review several well-known examples that successfully integrate host-pathogen research with natural history collections (e.g., yellow fever, hantaviruses, helminths). However, vouchering remains an underutilized practice in such studies. Using an online survey, we assessed vouchering practices used by microbiologists (e.g., bacteriologists, parasitologists, virologists) in host-pathogen research. A much greater number of respondents permanently archive microbiological samples than archive host specimens, and less than half of respondents voucher host specimens from which microbiological samples were lethally collected. To foster collaborations between microbiologists and natural history collections, we provide recommendations for integrating vouchering techniques and archiving of microbiological samples into host-pathogen studies. This integrative approach exemplifies the premise underlying One Health initiatives, providing critical infrastructure for addressing related issues ranging from public health to global climate change and the biodiversity crisis.


Subject(s)
Biomedical Research/standards , Communicable Diseases/pathology , Natural History/standards , Zoonoses/pathology , Animals , Biodiversity , Biomedical Research/trends , COVID-19/pathology , COVID-19/virology , Communicable Diseases/microbiology , Communicable Diseases/parasitology , Communicable Diseases/virology , Host-Pathogen Interactions , Humans , Museums/standards , SARS-CoV-2/classification , SARS-CoV-2/physiology , Specimen Handling , Zoonoses/microbiology , Zoonoses/parasitology , Zoonoses/virology
18.
Clin Epidemiol Glob Health ; 10: 100684, 2021.
Article in English | MEDLINE | ID: covidwho-987215

ABSTRACT

BACKGROUND: Having inadequate health care systems and poor socio-economic infrastructure, Bangladesh has been braving to contain the impact of current COVID-19 pandemic since March, 2020. To curb the diffusion of COVID-19, the local government has responded to the outbreak by enforcing a set of restricted measures on economic and social activities across the country. OBJECTIVES: Here, we aim to assess the propagation of COVID-19 by estimating the coronavirus active cases and mortality rate in two major business hubs of Bangladesh, namely Dhaka and Chittagong city under flexible lockdown conditions. METHODS: We apply a data-driven forecasting model using Susceptible, Exposed, Infected, Recovered and Deaths status through time to deal with coronavirus outbreak. RESULTS: The epidemiological model forecasts the dire consequences for Dhaka city with 2400 death cases at the end of December, 2020, whereas Chittagong city might experience 14% more deaths than Dhaka if the severe restrictions are not implemented to control the pandemic. CONCLUSION: Although lockdown has a positive impact in reducing the diffusion of COVID-19, it is disastrous for human welfare and national economies. Therefore, a unidirectional decision by the policymakers might cost a very high price on either way for a lower-middle-income country, Bangladesh. In this study, we suggest a fair trade-off between public health and the economy to avoid enormous death tolls and economic havoc in Bangladesh.

20.
Blood Adv ; 4(20): 5035-5039, 2020 10 27.
Article in English | MEDLINE | ID: covidwho-873910

ABSTRACT

The global pandemic of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)-driven coronavirus disease 2019 (COVID-19) has caused unprecedented human death and has seriously threatened the global economy. Early data suggest a surge in proinflammatory cytokines in patients with severe COVID-19, which has been associated with poor outcomes. We recently postulated that the inflammatory response in patients with severe COVID-19 disease is not inhibited by natural killer (NK) cells, resulting in a "cytokine storm." Here, we assessed the NK-cell functional activity and the associated cytokines and soluble mediators in hospitalized COVID-19 patients. Significantly impaired NK-cell counts and cytolytic activity were observed in COVID-19 patients when compared with healthy controls. Also, cytokines like interleukin 12 (IL12), IL15, and IL21 that are important for NK-cell activity were not detected systematically. Serum concentrations of soluble CD25 (sCD25)/soluble IL2 receptor α (sIL2-Rα) were significantly elevated and were inversely correlated with the percentage of NK cells. Impaired NK-cell cytolytic activity together with other laboratory trends including elevated sCD25 were consistent with a hyperinflammatory state in keeping with macrophage-activation syndrome. Our findings suggest that impaired counts and cytolytic activity of NK cells are important characteristics of severe COVID-19 and can potentially facilitate strategies for immunomodulatory therapies.


Subject(s)
Coronavirus Infections/immunology , Cytotoxicity, Immunologic , Killer Cells, Natural/immunology , Pneumonia, Viral/immunology , Adolescent , Adult , Aged , Betacoronavirus/immunology , COVID-19 , Coronavirus Infections/blood , Female , Humans , Inflammation/blood , Inflammation/immunology , Interleukin-2 Receptor alpha Subunit/blood , Interleukin-2 Receptor alpha Subunit/immunology , Interleukins/blood , Interleukins/immunology , Lymphocyte Count , Male , Middle Aged , Pandemics , Pneumonia, Viral/blood , SARS-CoV-2 , Severity of Illness Index , Young Adult
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